Technical replicate [1813]
Other ID	Platform	Instrument	Paired end	Seq. date	Strand mode	Max. read length	Chemistry version	Laboratory	Comments
CAGE_L_00206.BC12	Illumina	HiSeq 2500	No	Sept. 23, 2020	SR 1x50bp	50 bp	HiSeq SR Rapid Cluster Kit v2 GD-402-4002 + HiSeq Rapid Duo cBot Sample Loading Kit CT-403-2001 + SBS	Clinical Genomics Stockholm	None
Sequencing information Sequencing data Seq. ID Files Derived from Mapped genome Command Freeze version Comments CAGE_L_00206.BC12  CAGE_L_00206.BC12.sorted.tar.gz CAGE_L_00206.BC12_qfilter_trimBC.fq.gz CanFam4 — 4 — CAGE_L_00206.BC12  CAGE_L_00206.BC12_qfilter_trimBC.fq.gz — — — 4 —   Sequencing quality data Other ID Pool name BC reads Spike-in mapped reads Spike-in mapped % Canine mapped reads Canine mapped % Unmapped reads % Comments CAGE_L_00206.BC12 Nucleus reuniens - LGN pool 111,573,436 — — 5,737,455 66.80 — —

Technical replicate [1264]
Other ID	Platform	Instrument	Paired end	Seq. date	Strand mode	Max. read length	Chemistry version	Laboratory	Comments
STRT2_FP9_9	Illumina	NextSeq 550	No	Oct. 12, 2018	SR 1x75bp	75bp	NextSeq High Output	FuGU lab	Phi-X spike in added to each STRT2 library for sequencing (20%).
Sequencing information Sequencing data Seq. ID Files Derived from Mapped genome Command Freeze version Comments STRT2_FP9_9  STRT2_FP9_9_canine_mapped.bam STRT2_FP9_9_canine_mapped.fq.gz CanFam3.1 — 3.0 — STRT2_FP9_9  STRT2_FP9_9_canine_mapped.fq.gz — CanFam3.1 — 3.0 —   Sequencing quality data Other ID Pool name BC reads Spike-in mapped reads Spike-in mapped % Canine mapped reads Canine mapped % Unmapped reads % Comments STRT2_FP9_9 — — 359,315 — 1,875,172 59.80 — —