Technical replicate [1560]
Other ID	Platform	Instrument	Paired end	Seq. date	Strand mode	Max. read length	Chemistry version	Laboratory	Comments
STRT2_FP14_45	Illumina	NextSeq 550	No	May 2, 2019	SR 1x75bp	75bp	NextSeq High Output	FuGU lab	Phi-X spike in added to each STRT2 library for sequencing (20%).
Sequencing information Sequencing data Seq. ID Files Derived from Mapped genome Command Freeze version Comments STRT2_FP14_45  SDID_001974_STRT2_FP14_45_canine_mapped.fq.gz — CanFam3.1 — 3.0 — STRT2_FP14_45  SDID_001975_STRT2_FP14_45_canine_mapped.bam SDID_001974_STRT2_FP14_45_canine_mapped.fq.gz CanFam3.1 — 3.0 —   Sequencing quality data Other ID Pool name BC reads Spike-in mapped reads Spike-in mapped % Canine mapped reads Canine mapped % Unmapped reads % Comments STRT2_FP14_45 — — 112,536 — 1,627,177 65.20 — —

Technical replicate [1172]
Other ID	Platform	Instrument	Paired end	Seq. date	Strand mode	Max. read length	Chemistry version	Laboratory	Comments
STRT2_FP7_45	Illumina	NextSeq 550	No	Aug. 16, 2018	SR 1x75bp	75bp	NextSeq High Output	FuGU lab	Phi-X spike in added to each STRT2 library for sequencing (20%).
Sequencing information Sequencing data Seq. ID Files Derived from Mapped genome Command Freeze version Comments STRT2_FP7_45  STRT2_FP7_45_canine_mapped.bam STRT2_FP7_45_canine_mapped.fq.gz CanFam3.1 — 3.0 — STRT2_FP7_45  STRT2_FP7_45_canine_mapped.fq.gz — CanFam3.1 — 3.0 —   Sequencing quality data Other ID Pool name BC reads Spike-in mapped reads Spike-in mapped % Canine mapped reads Canine mapped % Unmapped reads % Comments STRT2_FP7_45 — — 69,588 — 557,982 65.80 — —

Technical replicate [1408]
Other ID	Platform	Instrument	Paired end	Seq. date	Strand mode	Max. read length	Chemistry version	Laboratory	Comments
STRT2_FP9_43	Illumina	NextSeq 550	No	Oct. 12, 2018	SR 1x75bp	75bp	NextSeq High Output	FuGU lab	Phi-X spike in added to each STRT2 library for sequencing (20%).
Sequencing information Sequencing data Seq. ID Files Derived from Mapped genome Command Freeze version Comments STRT2_FP9_43  STRT2_FP9_43_canine_mapped.bam STRT2_FP9_43_canine_mapped.fq.gz CanFam3.1 — 3.0 — STRT2_FP9_43  STRT2_FP9_43_canine_mapped.fq.gz — CanFam3.1 — 3.0 —   Sequencing quality data Other ID Pool name BC reads Spike-in mapped reads Spike-in mapped % Canine mapped reads Canine mapped % Unmapped reads % Comments STRT2_FP9_43 — — 320,257 — 1,210,489 59.00 — —