| Sample ID: | 3311 |
|---|---|
| Anatomical region: | thoracic cavity |
| Organ system: | cardiovascular system |
| Term: | vena cava |
| Sub-term: | vena cava |
| Sampling: | 2017-09-12 / provided by Lohi lab |
| Transport media: | RNAlater |
| Additional info: | — |
| From subject: | RW589 |
|---|---|
| Breed (variant): | Rottweiler |
| Sex: | Male |
| Age: | 5y 1m |
| Steril./Castr.: | No |
| Reports: | Necropsy report Clinical test results |
| WGS ID: | RW589A1, BioProject PRJNA907518, SRR22520744 |
| Additional info: | — |
| Study: | Study of gene expression across dog tissues |
|---|---|
| Description: | This project will generate the critical resources to better utilize various canine models to advance both dog and human health. |
| Status / Visibility: | Submitted / Public |
| Publication: | The DoGA consortium expression atlas of promoters and genes in 100 canine tissues. Nat. Commun. 2024, 15(1):9082 (PMID: 39433728) |
| Other IDs: | PRJNA907518 |
| Additional info: | — |
| RNA extraction | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Date | Bioanalizer ID | Stock Conc. (ng/µl) |
Tissue ammount | Sample volume | RNA amount (ng) |
Extraction method | RIN | Ratio A260/A280 |
Ratio A260/A230 |
Comments |
| 450 | 2018-04-24 | 3311 (8.6.2018) | 100 (ND) | 3 mm3 | 30 | 3025 | QIAZOL + QIAGEN RNeasy Mini Kit | 7.90 | 2.5211 | 1.66 | — |
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Applied assays
This sample was not sequenced yet.
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| RNA extraction | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Date | Bioanalizer ID | Stock Conc. (ng/µl) |
Tissue ammount | Sample volume | RNA amount (ng) |
Extraction method | RIN | Ratio A260/A280 |
Ratio A260/A230 |
Comments | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 690 | 2017-09-18 | RW589 3311 | 90.0 (ND) | 26 mg | 30 | 2700.0 | QIAGEN RNeasy Mini kit + Proteinase K | 7.70 | 2.056 | 1.923 | — | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Applied assays
STRT2-seq
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