| Sample ID: | 4602 |
|---|---|
| Anatomical region: | thoracic cavity |
| Organ system: | cardiovascular system |
| Term: | vena cava |
| Sub-term: | vena cava |
| Sampling: | 2018-02-07 / provided by Lohi lab |
| Transport media: | RNAlater |
| Additional info: | Not all the tissues were collected from this dog. |
| From subject: | VEO010 |
|---|---|
| Breed (variant): | East-European Shepherd |
| Sex: | Female |
| Age: | 2y 10m |
| Steril./Castr.: | Not specified |
| Reports: | Necropsy report |
| WGS ID: | — |
| Additional info: | — |
| Study: | Study of gene expression across dog tissues |
|---|---|
| Description: | This project will generate the critical resources to better utilize various canine models to advance both dog and human health. |
| Status / Visibility: | Submitted / Public |
| Publication: | The DoGA consortium expression atlas of promoters and genes in 100 canine tissues. Nat. Commun. 2024, 15(1):9082 (PMID: 39433728) |
| Other IDs: | PRJNA907518 |
| Additional info: | — |
| RNA extraction | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Date | Bioanalizer ID | Stock Conc. (ng/µl) |
Tissue ammount | Sample volume | RNA amount (ng) |
Extraction method | RIN | Ratio A260/A280 |
Ratio A260/A230 |
Comments |
| 432 | 2018-08-24 | 4602 (12.9.2018) | 80 (ND) | 2 mm3 | 30 | 2415 | QIAZOL + QIAGEN RNeasy Mini Kit | 8.00 | 1.86 | 1.38 | — |
|
Applied assays
This sample was not sequenced yet.
|
|||||||||||
| RNA extraction | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Date | Bioanalizer ID | Stock Conc. (ng/µl) |
Tissue ammount | Sample volume | RNA amount (ng) |
Extraction method | RIN | Ratio A260/A280 |
Ratio A260/A230 |
Comments | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 677 | 2018-06-18 | 4602 (25.6.2018) | 99.0 (QUBIT) | 2 mm3 | 30 | 2452.5 | QIAZOL + QIAGEN RNeasy Mini Kit | 7.50 | 1.91 | 1.66 | — | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Applied assays
STRT2-seq
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||