Sample ID: | 4602 |
---|---|
Anatomical region: | thoracic cavity |
Organ system: | cardiovascular system |
Term: | vena cava |
Sub-term: | vena cava |
Sampling: | 2018-02-07 / provided by Lohi lab |
Transport media: | RNAlater |
Additional info: | Not all the tissues were collected from this dog. |
From subject: | VEO010 |
---|---|
Breed (variant): | East-European Shepherd |
Sex: | Female |
Age: | 2y 10m |
Steril./Castr.: | Not specified |
Reports: | Necropsy report |
WGS ID: | — |
Additional info: | — |
Study: | Study of gene expression across dog tissues |
---|---|
Description: | This project will generate the critical resources to better utilize various canine models to advance both dog and human health. |
Status / Visibility: | Submitted / Public |
Publication: | The DoGA consortium expression atlas of promoters and genes in 100 canine tissues. Nat. Commun. 2024, 15(1):9082 (PMID: 39433728) |
Other IDs: | PRJNA907518 |
Additional info: | — |
RNA extraction | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
ID | Date | Bioanalizer ID | Stock Conc. (ng/µl) |
Tissue ammount | Sample volume | RNA amount (ng) |
Extraction method | RIN | Ratio A260/A280 |
Ratio A260/A230 |
Comments |
432 | 2018-08-24 | 4602 (12.9.2018) | 80 (ND) | 2 mm3 | 30 | 2415 | QIAZOL + QIAGEN RNeasy Mini Kit | 8.00 | 1.86 | 1.38 | — |
Applied assays
This sample was not sequenced yet.
|
RNA extraction | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Date | Bioanalizer ID | Stock Conc. (ng/µl) |
Tissue ammount | Sample volume | RNA amount (ng) |
Extraction method | RIN | Ratio A260/A280 |
Ratio A260/A230 |
Comments | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
677 | 2018-06-18 | 4602 (25.6.2018) | 99.0 (QUBIT) | 2 mm3 | 30 | 2452.5 | QIAZOL + QIAGEN RNeasy Mini Kit | 7.50 | 1.91 | 1.66 | — | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Applied assays
STRT2-seq
|